[Bioperl-l] NCBI Blast via HTTP

Chris Fields cjfields at uiuc.edu
Wed Mar 14 12:16:52 EDT 2007


I tried this today and had no issues.  The NCBI BLAST server is  
typically busy so you may have to wait dep. on the type of BLAST you  
intend on running, whether you use stats, etc.  You can check on the  
status if you set RemoteBlast::verbose() to 1.  Warning: it's pretty  
noisy as verbose returns the HTMLized page containing the length of  
time to recheck the RID.

chris

On Mar 14, 2007, at 5:59 AM, al bob wrote:

> Hi,
>
> I'm wondering if there is a problem with the remote
> execution of the NCBI Blast via HTTP using bioperl
> object Bio::Tools::Run::RemoteBlast. I used it last
> year and it was perfect but I don't know why after
> 20th of January, it doesn't work any more : it appears
> to run very slow but it doen't give a result even
> after a long time waiting.
>
> Thanks for any advice.
>
> Bob,
>
>
> 	
>
> 	
> 		
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Christopher Fields
Postdoctoral Researcher
Lab of Dr. Robert Switzer
Dept of Biochemistry
University of Illinois Urbana-Champaign






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