[Bioperl-l] NCBI Blast via HTTP
cjfields at uiuc.edu
Wed Mar 14 12:16:52 EDT 2007
I tried this today and had no issues. The NCBI BLAST server is
typically busy so you may have to wait dep. on the type of BLAST you
intend on running, whether you use stats, etc. You can check on the
status if you set RemoteBlast::verbose() to 1. Warning: it's pretty
noisy as verbose returns the HTMLized page containing the length of
time to recheck the RID.
On Mar 14, 2007, at 5:59 AM, al bob wrote:
> I'm wondering if there is a problem with the remote
> execution of the NCBI Blast via HTTP using bioperl
> object Bio::Tools::Run::RemoteBlast. I used it last
> year and it was perfect but I don't know why after
> 20th of January, it doesn't work any more : it appears
> to run very slow but it doen't give a result even
> after a long time waiting.
> Thanks for any advice.
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