[Bioperl-l] about mirbase

Chris Fields cjfields at uiuc.edu
Tue Mar 20 23:38:46 EDT 2007


Unfortunately there is no direct interface that I know of.  I did  
notice you can download the miRNA sequences in EMBL format or FASTA  
format from here:

http://microrna.sanger.ac.uk/sequences/ftp.shtml

so you might be able to index them somehow locally.

chris

On Mar 19, 2007, at 11:17 AM, zhang zhang wrote:

> Dear all,
>
> Is there any modules in Bioperl which can link to MirBase(micrRNA  
> database)?? If there is, could you give me the script about how to  
> access it? Thanks in advance.
>
> Regards,
> Jenny
>
> _________________________________________________________________
> 享用世界上最大的电子邮件系统— MSN Hotmail。  http:// 
> www.hotmail.com
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l

Christopher Fields
Postdoctoral Researcher
Lab of Dr. Robert Switzer
Dept of Biochemistry
University of Illinois Urbana-Champaign






More information about the Bioperl-l mailing list