[Bioperl-l] Bio::Tools::Run::Signalp

Chris Fields cjfields at uiuc.edu
Wed Mar 21 00:24:10 EDT 2007


On Mar 20, 2007, at 10:59 PM, Neil Saunders wrote:

> hi guys,
>
> Thanks for your input on Bio::Tools::Signalp.  I got a colleague of  
> mine, Ronald Schroeter (ronalds at itee.uq.edu.au) to look at the  
> module and he has made some minor modifications so that it now  
> parses signalp version 3.0 output correctly.
>
> I've added his module as an attachment at bugzilla:
> http://bugzilla.open-bio.org/show_bug.cgi?id=2203
>
> This is not meant to replace Emmanuel's efforts with  
> ExtendedSignalp.pm - rather, it functions as a replacement for the  
> existing Signalp.pm (which doesn't handle version 3 output).  I  
> hope this doesn't muddy the waters too much.
>
>
> Neil

Thanks for the module Neil; the additional v3 Signalp tests now  
pass.  I committed both to CVS.

We probably should merge the two Signalp modules ala the recent  
Glimmer work (parses all Glimmer versions now).  Unfortunately I  
don't know anyone who has time for it at this moment (I'm up to my  
neck in my own work!).

chris


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