[Bioperl-l] Bio::Graphics::Panel and ModPerl::Registry

Matthew Betts betts at embl.de
Thu Mar 22 05:16:33 EDT 2007


Thanks Chris,

I was using the 1.4.0 stable release before, and just upgraded to 1.5.2 
and it works now. I searched bugzilla before sending my last email, but 
couldn't see anything relevant (but I was searching for __DATA__, 
mod_perl, etc, which as you say may not have been the problem).

Thanks again for the quick reply,

Matthew

On Wed, 21 Mar 2007, Chris Fields wrote:

> I don't think the __END__/__DATA__ tag is the issue.  The mod_perl docs
> section you refer to indicates the problems with using __END__/__DATA__ lie in
> the actual Apache::Registry scripts (which are wrapped in a handler sub), not
> Perl modules.  The error you report doesn't match up either; I would expect a
> missing brackets problem, as stated in the docs.
> 
> What bioperl version are you using?  The line numbering in your reported error
> doesn't match up with bioperl CVS or the last release.  One aspect may be that
> this has been fixed already, so you could try updating bioperl to the latest
> release or from CVS to see if that fixes the problem.
> 
> chris
> 
> On Mar 21, 2007, at 8:39 AM, Matthew Betts wrote:
> 
> > 
> > Hi,
> > 
> > I'm using Bio::Graphics::Panel under modperl2. The script runs without
> > errors the first time, but every subsequent time I get errors like:
> > 
> > Illegal hexadecimal digit '-' ignored at
> > /usr/lib/perl5/site_perl/5.8.5/Bio/Graphics/Panel.pm line 813, <DATA>
> > line
> > 18.
> > 
> > As far as I can find out this is because __END__ and __DATA__ tokens can
> > not be used with mod_perl.
> > http://perl.apache.org/docs/1.0/guide/porting.html
> > 
> > Am I doing something wrong, and is there any way around this please?
> > 
> > Thanks,
> > 
> > Matthew
> > _______________________________________________
> > Bioperl-l mailing list
> > Bioperl-l at lists.open-bio.org
> > http://lists.open-bio.org/mailman/listinfo/bioperl-l
> 
> Christopher Fields
> Postdoctoral Researcher
> Lab of Dr. Robert Switzer
> Dept of Biochemistry
> University of Illinois Urbana-Champaign
> 
> 
> 
> 


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