[Bioperl-l] rpsblast results unsupported by Bio::SearchIO::Writer

Emeric Sevin emeric.sevin at univ-rennes1.fr
Thu Mar 22 11:07:57 EDT 2007


I am new to this community, and apologize if this subject has been 
posted before.

I want to print out only selected results from a multiple 
blast-alignments results file. Problem is, the algorithm used is 
rpsblast. The parsing (with Bio::SearchIO) goes fine, but the actual 
writing task yields "unclean" warnings. Although an ouput is actually 
written, the writer (Bio::SearchIO::Writer::TextResultWriter) seems to 
be disturbed by the fact rpsblast DBs are not labeled with 
Does anybody know of an easy fix to that bug, or of another way to come 
around it?

Thank you very much

Emeric SEVIN
Université de Rennes 1
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