[Bioperl-l] Aligning two alignments ...

Stéphane Téletchéa steletch at jouy.inra.fr
Tue Mar 27 11:12:55 EDT 2007

Dear all,

I'm trying to compare alignments results for small protein sequences to 
validate my result from another method. In the best option, i would do 
on two sequences

- run a clustalw alignment
- run a blast alignment
- run a T-Coffee alignment
- use my own

And align them all to see easily what is identical, what differs.

I've considered doing a simple match, but with more than two methods to 
compare, this may not be trivial. I'd like you opinion on this please.

I would consider sequence I as a reference and sequence II as the 
alignment target.

Thanks a lot in advance for your comments,

Stéphane Téletchéa, PhD.                  http://www.steletch.org
Unité Mathématique Informatique et Génome http://migale.jouy.inra.fr/mig
INRA, Domaine de Vilvert                  Tél : (33) 134 652 891
78352 Jouy-en-Josas cedex, France         Fax : (33) 134 652 901

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