[Bioperl-l] from transcript to genes

Sendu Bala bix at sendu.me.uk
Wed Mar 28 05:44:56 EDT 2007


zhang zhang wrote:
> Dear all,
> 
> I just begin to use Ensembl perl API. for example, now I have zebrafish 
> transcrits like "ENSDART00000011751", how can I find its corresponding 
> gene and further get gene's location such chromosome, start, end 
> information?
> 
> what kinds of ensembl database and adaptors or methods should I use?

Ask on the ensembl-dev mailing list and/or read the ensembl API docs:

http://www.ensembl.org/info/about/contact.html
http://www.ensembl.org/info/software/core/core_tutorial.html
http://www.ensembl.org/info/software/Pdoc/ensembl/index.html



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