[Bioperl-l] PAML/Codeml parsing

Jason Stajich jason at bioperl.org
Thu Nov 1 10:22:14 EDT 2007


PAML4 breaks our PAML parser right now because the order of things in  
the result file has changed.  Now sequences precede the information  
about the version or the program run.  This means that $result- 
 >get_seqs() fails because we don't parse the sequences.

We'll see what we can do, but as usual with supporting 3rd party  
programs it is brittle when file formats change.  Th

-jason

--
Jason Stajich
jason at bioperl.org



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