[Bioperl-l] PSI-BLAST

Bernd Web bernd.web at gmail.com
Mon Nov 5 11:53:01 EST 2007


Hi,

Is it possible with SearchIO to select a specific iteration (Results
from round i) part of the PSI-blast report, when parsing this with
SearchIO::blast?
It seems the parser parses the complete report. If not implemented I
could of course extract the specific part of the psi-blast report and
then give it too SearchIO (e.g. with IO::String), but maybe I am
missing a built-in option?


Regards,
Bernd


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