[Bioperl-l] Bio::Ext::Align?

Kevin Brown Kevin.M.Brown at asu.edu
Wed Nov 7 13:04:50 EST 2007


I installed bioperl-ext from CVS, but can't figure out what else is
missing to utilize Bio::Tools::pSW.  The error I get from the example
script in the wiki is:

The C-compiled engine for Smith Waterman alignments (Bio::Ext::Align)
has not been installed.
 Please read the install the bioperl-ext package

BEGIN failed--compilation aborted at
/usr/lib/perl5/site_perl/5.8.5/Bio/Tools/pSW.pm line 128.
Compilation failed in require at ./align_test.pl line 3.
BEGIN failed--compilation aborted at ./align_test.pl line 3.

In /usr/lib/perl5/site_perl/5.8.5/Bio/Ext there is a folder called
Align, but no Align.pm file.

I followed the directions in the wiki to install 1.5.2_102 (think I had
_100 installed previously).  Any thoughts on what I'm missing?



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