November 2007 Archives by thread

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Starting: Thu Nov 1 00:03:01 EDT 2007
Ending: Fri Nov 30 23:37:50 EST 2007
Messages: 165

• [Bioperl-l] BLAST output parsing   Barry Moore
• [Bioperl-l] bioperl: cannot run emboss programs using bioperl on windows   Rohit Ghai
  • [Bioperl-l] bioperl: cannot run emboss programs using bioperl on windows   Jason Stajich
    • [Bioperl-l] bioperl: cannot run emboss programs using bioperl on windows   Chris Fields
    • [Bioperl-l] bioperl: cannot run emboss programs using bioperlon windows   Rohit Ghai
      • [Bioperl-l] bioperl: cannot run emboss programs using bioperlon windows   Jason Stajich
      • [Bioperl-l] bioperl: cannot run emboss programs using bioperlonwindows   Rohit Ghai
      • [Bioperl-l] bioperl: cannot run emboss programs usingbioperlonwindows   Cook, Malcolm
      • [Bioperl-l] bioperl: cannot run emboss programs usingbioperlonwindows   Mauricio Herrera Cuadra
      • [Bioperl-l] bioperl: cannot run emboss programs using bioperlonwindows   Chris Fields
      • [Bioperl-l] bioperl: cannot run emboss programs using bioperlon windows   Rohit Ghai
      • [Bioperl-l] bioperl: cannot run emboss programs using bioperlon windows   Scott Markel
  • [Bioperl-l] bioperl: cannot run emboss programs using bioperl onwindows   Kevin Brown
• [Bioperl-l] PAML/Codeml parsing   Jason Stajich
• [Bioperl-l] PAML3 vs 4   Jason Stajich
• [Bioperl-l] need help   neeti somaiya
  • [Bioperl-l] need help   Will Spooner
• [Bioperl-l] question -- Bio::SeqFeature::Gene::Transcript   Hilmar Lapp
• [Bioperl-l] Help with Bio::SeqIO   download on demand
  • [Bioperl-l] Help with Bio::SeqIO   Chris Fields
    • [Bioperl-l] Help with Bio::SeqIO   Jay Hannah
    • [Bioperl-l] Help with Bio::SeqIO   Hilmar Lapp
      • [Bioperl-l] Help with Bio::SeqIO   Jay Hannah
      • [Bioperl-l] Help with Bio::SeqIO   Chris Fields
      • [Bioperl-l] Help with Bio::SeqIO   Jason Stajich
      • [Bioperl-l] Help with Bio::SeqIO   Chris Fields
      • [Bioperl-l] Help with Bio::SeqIO   Hilmar Lapp
      • [Bioperl-l] Help with Bio::SeqIO   Chris Fields
      • [Bioperl-l] Help with Bio::SeqIO   Chris Fields
      • [Bioperl-l] Help with Bio::SeqIO   Hilmar Lapp
• [Bioperl-l] Bioperl + standalone blast on Mac= cannot find path to blastall   Jean-luc Jany
  • [Bioperl-l] Bioperl + standalone blast on Mac= cannot find path to blastall   Brian Osborne
    • [Bioperl-l] Bioperl + standalone blast on Mac= cannot find path to blastall   Mauricio Herrera Cuadra
• [Bioperl-l] bioperl and emboss on windows   Rohit Ghai
• [Bioperl-l] how to extract intron information from gff files.   =?gb2312?B?va0gzsTi/Q==?=
• [Bioperl-l] perl question   neeti somaiya
  • [Bioperl-l] perl question   Spiros Denaxas
  • [Bioperl-l] perl question   Tim Nugent
  • [Bioperl-l] perl question   Marc Logghe
  • [Bioperl-l] perl question   Andreas Kahari
    • [Bioperl-l] perl question   Sendu Bala
      • [Bioperl-l] perl question   Andreas Kahari
  • [Bioperl-l] perl question   Sendu Bala
• [Bioperl-l] PSI-BLAST   Bernd Web
• [Bioperl-l] Bioperl + standalone blast on Mac= cannot find path to blastall   Jean-luc Jany
• [Bioperl-l] lightweight sequence features   Jason Stajich
  • [Bioperl-l] lightweight sequence features   Chris Fields
    • [Bioperl-l] lightweight sequence features   Jason Stajich
• [Bioperl-l] Bio::Tools::Run::Mdust   Heikki Lehvaslaiho
• [Bioperl-l] Bio::Ext::Align?   Kevin Brown
• [Bioperl-l] (no subject)   Jason Stajich
  • [Bioperl-l] (no subject)   Lincoln Stein
    • [Bioperl-l] (no subject)   Jason Stajich
      • [Bioperl-l] (no subject)   Chris Fields
      • [Bioperl-l] lightweight features   Hilmar Lapp
      • [Bioperl-l] lightweight features   Chris Fields
• [Bioperl-l] test please ignore   Chris Fields
  • [Bioperl-l] test please ignore   Stefan Kirov
• [Bioperl-l] test please ignore   Chris Fields
• [Bioperl-l] Bio::Ext::Align?   Kevin Brown
• [Bioperl-l] What does Expect(2) mean in a blast result?   Amir Karger
  • [Bioperl-l] What does Expect(2) mean in a blast result?   Dave Messina
    • [Bioperl-l] What does Expect(2) mean in a blast result?   Steve Chervitz
      • [Bioperl-l] What does Expect(2) mean in a blast result?   Amir Karger
      • [Bioperl-l] What does Expect(2) mean in a blast result?   Chris Fields
      • [Bioperl-l] What does Expect(2) mean in a blast result?   Amir Karger
    • [Bioperl-l] What does Expect(2) mean in a blast result?   Amir Karger
• [Bioperl-l] GFF3loader and indexing   Chris Fields
• [Bioperl-l] Panel link   Bernd Web
• [Bioperl-l] chromatogram   Lee Katz
  • [Bioperl-l] chromatogram   Smithies, Russell
    • [Bioperl-l] chromatogram   Malay
      • [Bioperl-l] chromatogram   Smithies, Russell
      • [Bioperl-l] chromatogram   Malay
      • [Bioperl-l] chromatogram   Lee Katz
      • [Bioperl-l] chromatogram   Scott Cain
      • [Bioperl-l] chromatogram   Dave Messina
  • [Bioperl-l] chromatogram   Smithies, Russell
    • [Bioperl-l] chromatogram   Torsten Seemann
• [Bioperl-l] Installing Bioperl on Windows XP   Roshan Makam
  • [Bioperl-l] Installing Bioperl on Windows XP   Chris Fields
• [Bioperl-l] how to load all genomes   Denis Reshetov
  • [Bioperl-l] how to load all genomes   Barry Moore
• [Bioperl-l] problems in stalling bio perl   Tomer Hertz
  • [Bioperl-l] problems in stalling bio perl   Brian Osborne
• [Bioperl-l] Graphics::Panel   Bernd Web
  • [Bioperl-l] Graphics::Panel   Lincoln Stein
    • [Bioperl-l] Graphics::Panel   Bernd Web
• [Bioperl-l] What's the best way to produce gff files from genebank/embl formats?   Lucia Peixoto
  • [Bioperl-l] What's the best way to produce gff files from genebank/embl formats?   Chris Fields
    • [Bioperl-l] What's the best way to produce gff files from genebank/embl formats?   Brian Osborne
      • [Bioperl-l] What's the best way to produce gff files from genebank/embl formats?   aaron.j.mackey at gsk.com
• [Bioperl-l] Problem with installing bioperl on Windows   Roshan Makam
• [Bioperl-l] problem with Bio::SeqIo KEGG - need help urgently   neeti somaiya
  • [Bioperl-l] problem with Bio::SeqIo KEGG - need help urgently   Chris Fields
• [Bioperl-l] blast database names   Caroline Johnston
  • [Bioperl-l] blast database names   Chris Fields
    • [Bioperl-l] blast database names   Caroline Johnston
• [Bioperl-l] pSW vs dpAlign   Kevin Brown
• [Bioperl-l] coloring of HSPs in blast panel   Bernd Web
  • [Bioperl-l] coloring of HSPs in blast panel   Bernd Web
    • [Bioperl-l] coloring of HSPs in blast panel   Steve Chervitz
      • [Bioperl-l] coloring of HSPs in blast panel   Chris Fields
      • [Bioperl-l] coloring of HSPs in blast panel   Steve Chervitz
      • [Bioperl-l] coloring of HSPs in blast panel   Chris Fields
• [Bioperl-l] Installing bioperl-ext on Mac   Jonathan Binkley
  • [Bioperl-l] Installing bioperl-ext on Mac   Steve Chervitz
• [Bioperl-l] Porblems with Bio::Tools::Run::Phylo::PAML::Baseml   Daniel Jeffares
  • [Bioperl-l] Porblems with Bio::Tools::Run::Phylo::PAML::Baseml   Dave Messina
    • [Bioperl-l] Porblems with Bio::Tools::Run::Phylo::PAML::Baseml   Sendu Bala
      • [Bioperl-l] Porblems with Bio::Tools::Run::Phylo::PAML::Baseml   Albert Vilella
      • [Bioperl-l] Porblems with Bio::Tools::Run::Phylo::PAML::Baseml   Chris Fields
• [Bioperl-l] [BioSQL-l] BioSQL : GenBank db_xref names in dbxref table   Mauricio Herrera Cuadra
  • [Bioperl-l] [BioSQL-l] BioSQL : GenBank db_xref names in dbxref table   Chris Fields
• [Bioperl-l] proposed change -- symbols SimpleAlign   Albert Vilella
  • [Bioperl-l] proposed change -- symbols SimpleAlign   Chris Fields
  • [Bioperl-l] proposed change -- symbols SimpleAlign   Chris Fields
    • [Bioperl-l] proposed change -- symbols SimpleAlign   Albert Vilella
      • [Bioperl-l] proposed change -- symbols SimpleAlign   Chris Fields
      • [Bioperl-l] proposed change -- symbols SimpleAlign   Bernd Web
      • [Bioperl-l] proposed change -- symbols SimpleAlign   Chris Fields
• [Bioperl-l] run RNAfold in perl   vanam
  • [Bioperl-l] run RNAfold in perl   Chris Fields
    • [Bioperl-l] run RNAfold in perl   vanam
      • [Bioperl-l] run RNAfold in perl   Chris Fields
      • [Bioperl-l] run RNAfold in perl   vanam
      • [Bioperl-l] run RNAfold in perl   Chris Fields
• [Bioperl-l] [ANNOUNCE] bioperl-ext updates and bioperl-live   Chris Fields
• [Bioperl-l] help using SEARCH IO to parse blast results   alison waller
  • [Bioperl-l] help using SEARCH IO to parse blast results   Sendu Bala
    • [Bioperl-l] help using SEARCH IO to parse blast results   Dave Messina
      • [Bioperl-l] help using SEARCH IO to parse blast results   Smithies, Russell
      • [Bioperl-l] help using SEARCH IO to parse blast results   Chris Fields
      • [Bioperl-l] help using SEARCH IO to parse blast results   alison waller
      • [Bioperl-l] help using SEARCH IO to parse blast results   Chris Fields
  • [Bioperl-l] help using SEARCH IO to parse blast results   dennis prickett (IAH-C)
• [Bioperl-l] Bioperl-ext test fails   a_arya2000
  • [Bioperl-l] Bioperl-ext test fails   Sendu Bala
    • [Bioperl-l] Bioperl-ext test fails   Chris Fields
• [Bioperl-l] Bio::Tools::Run::Primer3   Caroline Johnston
  • [Bioperl-l] Bio::Tools::Run::Primer3   Chris Fields
• [Bioperl-l] Helical Wheel module   Tim Nugent
  • [Bioperl-l] Helical Wheel module   Chris Fields
• [Bioperl-l] Remove sites of an alignment   Tristan Lefebure
• [Bioperl-l] Remove sites of an alignment   Tristan Lefebure
  • [Bioperl-l] Remove sites of an alignment   Sendu Bala
    • [Bioperl-l] Remove sites of an alignment   Tristan Lefebure
      • [Bioperl-l] Parsing Entrez Gene ASN.1   Smithies, Russell
      • [Bioperl-l] Parsing Entrez Gene ASN.1   Stefan Kirov
• [Bioperl-l] Collecting genomic DNA sequences using Entrez IDs   Paul N. Hengen
  • [Bioperl-l] Collecting genomic DNA sequences using Entrez IDs   Chris Fields
    • [Bioperl-l] Collecting genomic DNA sequences using Entrez IDs   Stefan Kirov
  • [Bioperl-l] Collecting genomic DNA sequences using Entrez IDs   Cook, Malcolm
    • [Bioperl-l] Collecting genomic DNA sequences using Entrez IDs   Barry Moore
  • [Bioperl-l] Collecting genomic DNA sequences using Entrez IDs   Brian Osborne
• [Bioperl-l] Problems installing bioperl (bioperl-live tarball from CVS)   alison waller
  • [Bioperl-l] Problems installing bioperl (bioperl-live tarball from CVS)   Chris Fields
  • [Bioperl-l] Problems installing bioperl (bioperl-live tarball from CVS)   Sendu Bala
• [Bioperl-l] Trying to find multiple homologs in multiple databases   Viktor Martyanov
  • [Bioperl-l] Trying to find multiple homologs in multiple databases   Jason Stajich
• [Bioperl-l] PSIBLAST parsing added to SearchIO::blastxml   Chris Fields
• [Bioperl-l] Collecting genomic DNA sequences using Entrez IDs   Chris Fields
  • [Bioperl-l] Collecting genomic DNA sequences using Entrez IDs   Stefan Kirov
    • [Bioperl-l] Collecting genomic DNA sequences using Entrez IDs   Mauricio Herrera Cuadra
• [Bioperl-l] Problems installing bioperl (bioperl-live tarball from CVS)   Chris Fields

Last message date: Fri Nov 30 23:37:50 EST 2007
Archived on: Fri Nov 30 23:37:56 EST 2007

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