[Bioperl-l] Out of memory errors running Bio::ASN1::EntrezGeneagainst latest Homo_sapiens.ags file
hlapp at gmx.net
Sat Oct 13 17:49:49 EDT 2007
On Oct 12, 2007, at 2:19 PM, Kevin Brown wrote:
> IIRC most of the IO handlers for BioPerl load entire file contents
> into memory to process them
As was determined already this most likely isn't the issue here, but
I'm still confused by your statement. Most BioPerl Bio::SeqIO,
Bio::ClusterIO, and Bio::OntologyIO parsers read an input file line
by line, or at least by chunk.
Did you possibly mean something else?
: Hilmar Lapp -:- Durham, NC -:- hlapp at gmx dot net :
More information about the Bioperl-l