[Bioperl-l] get_Stream_by_gi: Memory going up every call.

Jelle86 snaphit at planet.nl
Fri Oct 26 08:42:13 EDT 2007


Ok I stripped a lot. And this is causing the problem:

use Bio::DB::Genbank;
sub new(){
  my $invocant = shift;
  my $class = ref($invocant) || $invocant;
  my $self = {@_};
  $self->{gb} = Bio::DB::GenBank->new();
  bless $self, $class;
  return $self;
}

sub streamQuery(){
	my $self = shift;        
	my $stream_obj = $self->{gb}->get_Stream_by_gi($self->{ids});
        while (my $seq_obj = $stream_obj->next_seq) {
                
        }
}

Both subs (new and streamQuery) are called several times with a new
accessionlist. 
Removing the while loop, will use a bit less memory. But the memory usage is
still going up.
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