[Bioperl-l] Fwd: Pairwaise_kaks.pl

Jason Stajich jason at bioperl.org
Tue Oct 30 11:16:59 EDT 2007


Denis -
Not sure - the list members will know more.

-jason
Begin forwarded message:

> From: "dennis prickett \(IAH-C\)" <dennis.prickett at bbsrc.ac.uk>
> Date: October 30, 2007 7:41:29 AM EDT
> To: <jason at bioperl.org>
> Subject: Pairwaise_kaks.pl
>
> Good morning,
>
> I'm attempting to set up the pairwise_kaks script here.
>
> I have successfully used an older version in a previous position so  
> I am
> somewhat familiar with it.
>
> I have installed bioperl-run in /usr/local/bioperl_run-1.5.2
> And have bioperl             in /usr/local/bioperl-1.5.2_100
>
>
> When I try to run the script I get the following
>
> Can't locate object method "_set_from_args" via package
> "Bio::Tools::Run::Alignment::Clustalw" at
> Bio/Tools/Run/Alignment/Clustalw.pm line 409.
>
> I'm not sure how to resolve this so I refer to a higher authority
>
> Merci
>
> Dennis Prickett
>
> Institute for Animal Health
> Compton nr Newbury
> Berkshire
> RG20 7NN
>
> Switchboard: +44  (0)1635 578411
> Central Fax: +44  (0)1635 57723
>

--
Jason Stajich
jason at bioperl.org



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