[Bioperl-l] SearchIO ResultWriter

Jason Stajich jason at bioperl.org
Wed Sep 5 17:33:44 EDT 2007


I think most ppl aren't that enamored with the NCBI XML Blast format  
but I guess it is standard if the NCBI puts it out...
It should be a pretty easy writer to make at any rate just follow  
along with what was done for BSMLWriter.

-jason
On Sep 5, 2007, at 1:37 PM, Steve Chervitz wrote:

> Looks like there is no such functionality in the current  
> repository. If you
> have implemented such a beast and are willing to contribute it, go  
> for it
> (or coordinate with a developer if you lack CVS write access).
>
> Steve
>
> On 9/5/07, Bernd Web <bernd.web at gmail.com> wrote:
>>
>> Hi,
>>
>> For SearchIO there are ResultWriters to write text, html and BSML
>> (BSMLResultWriter). However, is there also a BLAST xml writer, which
>> writes the original blast xml files. This may have come up before. If
>> there is not, is there interest in having this?
>>
>>
>> Regards,
>> Bernd
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>>
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--
Jason Stajich
jason at bioperl.org



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