[Bioperl-l] display protein/CDS multiple sequence alignments with exon boundaries
jay at jays.net
Thu Sep 6 15:50:53 EDT 2007
On Wed, 5 Sep 2007, Chris Fields wrote:
Wow. That's slick. :) Is it possible to zoom in far enough to see the
individual bases and gaps??
On Tue, 4 Sep 2007, Chris Fields wrote:
> Acc. to the Gbrowse tutorial GBrowse can deal with alignment data:
Yes, indeed. GBrowse graphs all sorts of amazing things. Specifically,
this image might be what Albert is looking for:
He'd need to map his exon boundaries from whatever format he has into a
GFF file (or DAS/BioSQL/Chado/? server, or...?) for GBrowse to munch on.
On Aug 31, 2007, at 4:29 AM, Albert Vilella wrote:
> "Something in the bioperl world without funky external dependencies"
There are still things the long arm of BioPerl justice hasn't reached? :)
More information about the Bioperl-l