[Bioperl-l] display protein/CDS multiple sequence alignments with exon boundaries

Chris Fields cjfields at uiuc.edu
Mon Sep 10 23:00:29 EDT 2007


Doesn't that work only for SeqFeature::SimilarityPair and HSP-like  
(paired) alignments, or am I mistaken?

chris

On Sep 10, 2007, at 5:09 PM, Lincoln Stein wrote:

> You can view a simple multiple alignment now. Go to  
> www.wormbase.org, turn
> on some of the EST tracks and then zoom down to base pair level.
>
> In bio::graphics, use the "segments" glyph and turn on the - 
> draw_target
> option. The features must have DNA attached to them.
>
> What's coming soon is support for MAF format, which provides genome- 
> level
> alignments.
>
> Lincoln




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