[Bioperl-l] Help for extracting CDS sequences from FASTA form

sheng zhao harryzs1981 at yahoo.com.cn
Fri Sep 21 10:40:55 EDT 2007


              Dear all:      
I have got a set of DAN sequences in FASTA form as following: 
   
  >gnl|UG|Bt#S37443275 Bos taurus cathelicidin 4, mRNA (cDNA clone MGC:157131 IMAGE:8442308), complete cds /cds=p(18,452) /gb=BC133480 /gi=126717494 /ug=Bt.3 /len=572
  TAGGCAGACTGGGGACCATGCAAACCCAGAGGGCCAGCCTCTCACTGGGGCGGTGGTCAC..................................
  >gnl|UG|Bt#S11932596 B.taurus mRNA for interleukin-5 /cds=p(1,405) /gb=Z67872 /gi=1113120 /ug=Bt.5 /len=405
  TAGGCAGACTGGGGACCATGCAAACCCAGAGGGCCAGCCTCTCACTGGGGCGGTGGTCAC...................................
  >gnl|UG|Bt#S29311270 Hw_Loin_11_0520_C11 Bos taurus CF-24-HW loin cDNA library Bos taurus cDNA, mRNA sequence /gb=DV796078 /gi=82648993 /ug=Bt.10 /len=1332
  AACCGGGAGCACGCCGTGTACCCGCCAGTGGGGCTTCTGAGGACATGGGGGCCACCGTCA...................................
   
  I would like to know how to extract CDS sequences from them? Or a Perl program?
   
  Thank you for your reply and help.
   
  Sincerely yours,
  Best wishes,
  Harry 




       
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