[Bioperl-l] Scoring an overlap

Florent Angly florent.angly at gmail.com
Sat Sep 22 01:02:28 EDT 2007

I need to quantify how good some overlaps in contigs are. I have 
extracted the alignment of the overlapping region and only need to score 
it. I noticed the Bio::Tools::dpAlign has a scoring function.
Is it the right tool for the right tool? Is there anything else?
Thank you,

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