[Bioperl-l] Bio::SeqFeature::Annotated / SOFA question
bix at sendu.me.uk
Thu Sep 27 09:47:06 EDT 2007
I want to create a Bio::SeqFeature::Annotated object where the 'type' is
I got the idea that 'conserved_region' might be ok from here:
However, this doesn't work since:
------------- EXCEPTION -------------
MSG: couldn't find a SOFA term matching type 'conserved_region'.
I'm guessing Bio::Ontology::OntologyStore is getting its allowed SOFA
I don't know much about this area. Can someone offer a little guidance
as to what the significance of these two different files is, why they
don't contain the same terms, and why I can't use 'conserved_region'?
What's the closest alternative term?
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