[Bioperl-l] [Gmod-gbrowse] quick update on bioperl nightly builds

Chris Fields cjfields at uiuc.edu
Wed Apr 2 11:54:05 EDT 2008


Okay, committed them.  The accept passthrough still appears to work;  
let me know if anything pops up.

chris

On Apr 2, 2008, at 10:03 AM, Chris Fields wrote:

> ...
> I'll try working on merging them together today; it shouldn't be too  
> hard (the changes were fairly minor in both Build.PL and  
> Module::Build).  I'll test to make sure your changes stay in as  
> well.  Down the road I believe we need to rethink how we want the  
> Build process to run using Module::Build as it's a bit convoluted,  
> but it works for now.
>
> chris
>
> On Apr 2, 2008, at 7:28 AM, Scott Cain wrote:
>> Hi Chris,
>>
>> (trimmed out gbrowse mailing list since this is just bioperl  
>> business)
>>
>> Speaking of the pass through stuff, Sendu mentioned that I stomped on
>> some changes to Build.PL that you and he did when I committed that
>> change, so it should be rolled back.  Is there a good (svn) way to do
>> that?  Or should I just copy the contents of the old (good) Build.PL
>> into a fresh file in my checkout and commit it?
>>
>> Thanks,
>> Scott
>>
>> On Tue, 2008-04-01 at 22:59 -0500, Chris Fields wrote:
>>> Nope, that isn't intended.  I fixed it and reran it manually, so it
>>> should be fine now (note I didn't update the log file; the next cron
>>> run will catch that).
>>>
>>> I may toy around with your recent passthrough flag addition to try
>>> getting automated PPM's up and running.
>>>
>>> chris
>>>
>>> On Apr 1, 2008, at 10:12 PM, Scott Cain wrote:
>>>
>>>> Hi Chris,
>>>>
>>>> The tarball is currently (Apr 1) being built in a tmp directory, so
>>>> that
>>>> the extracted tarball is ./tmp/bioperl-live/.  Is that intended?
>>>>
>>>> Thanks,
>>>> Scott
>>>>
>>>> On Tue, 2008-04-01 at 19:45 -0500, Chris Fields wrote:
>>>>> I'm simplifying the nightly build archive names (removing svn
>>>>> revision
>>>>> # and date) in case anyone needs to update bioperl-live/run/db/
>>>>> network
>>>>> on a regular basis (read: GBrowse installations).  When I have  
>>>>> time
>>>>> I'll start working on automated builds, which will require some  
>>>>> extra
>>>>> work with Module::Build and Build.PL.
>>>>>
>>>>> chris
>>>>> _______________________________________________
>>>>> Bioperl-l mailing list
>>>>> Bioperl-l at lists.open-bio.org
>>>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>>>> -- 
>>>> ------------------------------------------------------------------------
>>>> Scott Cain, Ph. D.                                         cain at cshl.edu
>>>> GMOD Coordinator (http://www.gmod.org/)
>>>> 216-392-3087
>>>> Cold Spring Harbor Laboratory
>>>>
>>>> _______________________________________________
>>>> Bioperl-l mailing list
>>>> Bioperl-l at lists.open-bio.org
>>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>>>
>>>
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>> -- 
>> ------------------------------------------------------------------------
>> Scott Cain, Ph. D.                                   cain.cshl at gmail.com
>> GMOD Coordinator (http://www.gmod.org/)                      
>> 216-392-3087
>> Cold Spring Harbor Laboratory
>>
>>
>
> Christopher Fields
> Postdoctoral Researcher
> Lab of Dr. Robert Switzer
> Dept of Biochemistry
> University of Illinois Urbana-Champaign
>
>
>
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> Bioperl-l at lists.open-bio.org
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Christopher Fields
Postdoctoral Researcher
Lab of Dr. Robert Switzer
Dept of Biochemistry
University of Illinois Urbana-Champaign





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