[Bioperl-l] installing bioperl-1.5.2 errors:DB_File

Pan Zheng zhpan99 at yahoo.com
Wed Apr 2 13:52:46 EDT 2008


Hi,
   
  I am installing bioperl-1.5.2_102 under cygwin on my Windows XP and having some errors during the process.
   
  When I was running "perl Build test", one major error is the error about DB_File. I tried to install DB_File from cpan and rpm without any luck.
   
  ++++++++++++++++++++++++
  CPAN: File::Temp loaded ok (v0.16)
CPAN: YAML loaded ok (v0.62)
    CPAN.pm: Going to build P/PM/PMQS/DB_File-1.817.tar.gz
  Parsing config.in...
Looks Good.
Checking if your kit is complete...
Looks good
Note (probably harmless): No library found for -ldb
Writing Makefile for DB_File
cp DB_File.pm blib/lib/DB_File.pm
AutoSplitting blib/lib/DB_File.pm (blib/lib/auto/DB_File)
gcc -c  -I/usr/local/BerkeleyDB/include -DPERL_USE_SAFE_PUTENV -fno-strict-alias
ing -pipe -Wdeclaration-after-statement -DUSEIMPORTLIB -O3   -DVERSION=\"1.817\"
 -DXS_VERSION=\"1.817\"  "-I/usr/lib/perl5/5.8/cygwin/CORE"  -D_NOT_CORE  -DmDB_
Prefix_t=size_t -DmDB_Hash_t=u_int32_t   version.c
version.c:30:16: db.h: No such file or directory
make: *** [version.o] Error 1
  PMQS/DB_File-1.817.tar.gz
  /usr/bin/make -- NOT OK
Running make test
  Can't test without successful make
Running make install
  Make had returned bad status, install seems impossible
Failed during this command:
 PMQS/DB_File-1.817.tar.gz                    : make NO
  +++++++++++++++++++++++++++++++++++++++++++++++
   
   
  I can't remember I had this kind error while installing earlier version.
   
  Would you please help me on DB_File installation ?
   
  Thanks.
   
  Pan

       
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