[Bioperl-l] Indexing large databases / BioSQL

Bánk Beszteri Bank.Beszteri at awi.de
Tue Apr 8 03:35:43 EDT 2008


>>Can you provide some examples of these warnings (of the taxons that
>>cause them)? If there's anything consistent about them perhaps
>>Bio::Species can be improved to accommodate them properly (instead of
>>just issuing the warning and getting the classification wrong).
>>    
>>
>
>All warnings (and a few errors) for swissprot are here:
>
>   http://bugzilla.open-bio.org/show_bug.cgi?id=2474
>
>as an attached file
>
>I suppose the OP will have encountered similar output - I don't think there is
>much RDBMS-type-dependency involved.
>  
>
Hi Erik & Sendu,

yes, the same kind of thing, probably no DBMS-type dependency; in case 
it could be useful, I uploaded my output as a second attachment to the 
bugzilla report cited above.

Bank


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