[Bioperl-l] Tandem Repeats Finder?

Smithies, Russell Russell.Smithies at agresearch.co.nz
Sun Apr 13 22:51:41 EDT 2008

Has anyone tried TRF? 
I notice UCSC is using it for all their simple repeat annotations and thought it might be better than what we're currently using (Sputnik)

And is there a BioPerl parser for it's output or am I going to have to write my own ?


Russell Smithies 

Bioinformatics Applications Developer 
T +64 3 489 9085 
E  russell.smithies at agresearch.co.nz 

Invermay  Research Centre 
Puddle Alley, 
New Zealand 
T  +64 3 489 3809   
F  +64 3 489 9174  

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