[Bioperl-l] Tandem Repeats Finder?

Ortutay Csaba Péter csaba.ortutay at gmail.com
Mon Apr 14 00:15:22 EDT 2008

Hello, I have used TRF in my earlier projects. It is nice and quick tool.

There was not ready made parsers those times (5-6 years ago) so we have 
written our own.


> Has anyone tried TRF?
> I notice UCSC is using it for all their simple repeat annotations and
> thought it might be better than what we're currently using (Sputnik)
> And is there a BioPerl parser for it's output or am I going to have to
> write my own ?
> Thanx,

Csaba Ortutay PhD
IMT Bioinformatics
University of Tampere

More information about the Bioperl-l mailing list