[Bioperl-l] bioperl-microarray: status?

Heikki Lehvaslaiho heikki at sanbi.ac.za
Wed Apr 16 07:36:16 EDT 2008


FYI,

Christoper Jones has just published 
[http://bioinformatics.oxfordjournals.org/cgi/content/short/24/8/1102 an 
article in Bioinformatics] about his 
[http://search.cpan.org/perldoc?Microarray Microarray perl module] in CPAN.

(The text added into BioPerl wiki.)

	-Heikki


On Friday 26 January 2007 16:05:01 Chris Fields wrote:
> Don't know if it's worth it, but could the microarray package be
> modified so that it deals with data generated from or interacts
> directly with Bioconductor (i.e. maybe including some specialized
> bioperl-run set of classes to run Bioconductor tasks, return
> lightweight bioperl microarray classes)?  Allen pointed out in a
> previous post that Bioconductor is the best pick for certain tasks,
> while Perl excels at others:
>
> http://article.gmane.org/gmane.comp.lang.perl.bio.general/13993
>
> Might be nice if we could merge both strengths together in some way.
>
> chris
>
> On Jan 26, 2007, at 7:26 AM, Jay Hannah wrote:
> > On Jan 25, 2007, at 2:30 AM, Allen Day wrote:
> >> Eh, there is some discussion activity on the list, but not much.  You
> >> are really better off moving to Bioconductor.
> >
> > Ok, thanks. I added that to the wiki page:
> >
> >     http://www.bioperl.org/wiki/Microarray_package
> >
> > j
> > seqlab.net
> > http://www.bioperl.org/wiki/User:Jhannah
> >
> > _______________________________________________
> > Bioperl-l mailing list
> > Bioperl-l at lists.open-bio.org
> > http://lists.open-bio.org/mailman/listinfo/bioperl-l
>
> Christopher Fields
> Postdoctoral Researcher
> Lab of Dr. Robert Switzer
> Dept of Biochemistry
> University of Illinois Urbana-Champaign
>
>
>
> _______________________________________________
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> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l



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     _/  _/  _/  Heikki Lehvaslaiho    heikki at_sanbi _ac _za
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