[Bioperl-l] [bioperl-l] index::abstract on win and unix

Smithies, Russell Russell.Smithies at agresearch.co.nz
Wed Apr 16 16:49:49 EDT 2008


Did you check the format of your input file?
i.e. DOS or UNIX line endings?

> -----Original Message-----
> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-bounces at lists.open-
> bio.org] On Behalf Of Frédéric Romagné
> Sent: Thursday, 17 April 2008 5:25 a.m.
> To: bioperl-l at lists.open-bio.org
> Subject: [Bioperl-l] [bioperl-l] index::abstract on win and unix
> 
> Hello,
> i made a program which use Bio::Index::GenBank and i tested it under
> unix, that worked well.
> 
> But i have to launch it under windows and it seems not to work on.
> 
> Here is the problem :
> 
> my $dbobj = Bio::Index::Abstract->new("Data/$db");
> my $seq = $dbobj->get_Seq_by_acc($id);
> print $seq->display_id."\n";
> 
> did not print the same number than $id !!! So i don't work on the
> sequence expected...
> 
> I use the SVN sources on unix and the Perl package manager for
> windows...
> 
> Thanks.
> 
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> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l

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