[Bioperl-l] WebBlat, where'd it go?

Spiros Denaxas spiros at lokku.com
Wed Apr 23 15:48:12 EDT 2008


Hey,

a quick look at the list of deprecated modules reveals that it has
indeed been removed,

http://www.bioperl.org/wiki/Deprecated_modules

Spiros

On Wed, Apr 23, 2008 at 8:39 PM, Arkady <bamboowarrior at gmail.com> wrote:
> Hi folks,
>
>  I'm trying to use BioPerl to run a BLAT search on the four primate
>  genomes on UCSC. I understand that the proper tool for this is
>  Bio::Tools::WebBlat. Unfortunately, it doesn't appear to be in my
>  bioperl distribution (nor do I even know how to figure out what
>  version that is, unfortunately, though it's a very recent install -- a
>  month ago?). I also can't find it on CPAN. Is this deprecated? Has
>  something else replaced it? Or are we always supposed to run local
>  BLAT?
>
>  Thanks.
>
>  John Woods
>
>  Institute for Cellular and Molecular Biology
>  The University of Texas at Austin
>  _______________________________________________
>  Bioperl-l mailing list
>  Bioperl-l at lists.open-bio.org
>  http://lists.open-bio.org/mailman/listinfo/bioperl-l
>


More information about the Bioperl-l mailing list