[Bioperl-l] WebBlat, where'd it go?

Chris Fields cjfields at uiuc.edu
Wed Apr 23 15:56:14 EDT 2008

It's no longer maintained (deprecated); see the following for an  


Basically, only local BLAT searches are supported through BioPerl.


On Apr 23, 2008, at 2:39 PM, Arkady wrote:

> Hi folks,
> I'm trying to use BioPerl to run a BLAT search on the four primate
> genomes on UCSC. I understand that the proper tool for this is
> Bio::Tools::WebBlat. Unfortunately, it doesn't appear to be in my
> bioperl distribution (nor do I even know how to figure out what
> version that is, unfortunately, though it's a very recent install -- a
> month ago?). I also can't find it on CPAN. Is this deprecated? Has
> something else replaced it? Or are we always supposed to run local
> Thanks.
> John Woods
> Institute for Cellular and Molecular Biology
> The University of Texas at Austin
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l

Christopher Fields
Postdoctoral Researcher
Lab of Dr. Robert Switzer
Dept of Biochemistry
University of Illinois Urbana-Champaign

More information about the Bioperl-l mailing list