[Bioperl-l] Indexing large databases / BioSQL
Bank.Beszteri at awi.de
Mon Apr 28 09:51:53 EDT 2008
Chris Fields schrieb:
> You should use 'swiss' format instead of 'embl' when loading
> Uniprot/SwissProt sequences. Though on the surface they're similar
> the feature table (among other things) is completely different. I'm
> not sure if that's causing all of the issues here but it certainly
> could contribute to them.
> In the meantime, it's much easier for us to track these problems if
> you file a bug (BioPerl, file for bioperl-db):
I will do so; in the meanwhile: I´m not loading Swissprot, but TrEMBL.
Is swiss also the appropriate format here? By reading
http://expasy.org/sprot/userman.html#diffEMBL, I concluded that embl
should be the one I´d need for TrEMBL.
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