[Bioperl-l] alignment by TCoffee as a subroutine

sergei ryazansky dr.hogart at gmail.com
Tue Apr 29 11:57:51 EDT 2008


Hi all!

I am trying to perform TCoffe aligment by  
Bio::Tools::Run::Alignment::TCoffee wrapper as subroutine into the script.  
This subroutine works fine, but it is not single subroutine - there are a  
lot of other ones in the script. The problem is when compilation of script  
finish execution (nb! successful execution) of tcoffee subroutine the  
compiliation of the end of the script also interrupted. It seems that the  
tcoffee program itself induce interraption of perl compilation. Is it  
possible to pass this problem?

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