[Bioperl-l] alignment by TCoffee as a subroutine

Sendu Bala bix at sendu.me.uk
Tue Apr 29 12:54:41 EDT 2008


sergei ryazansky wrote:
> I am trying to perform TCoffe aligment by 
> Bio::Tools::Run::Alignment::TCoffee wrapper as subroutine into the 
> script. This subroutine works fine, but it is not single subroutine - 
> there are a lot of other ones in the script. The problem is when 
> compilation of script finish execution (nb! successful execution) of 
> tcoffee subroutine the compiliation of the end of the script also 
> interrupted. It seems that the tcoffee program itself induce 
> interraption of perl compilation. Is it possible to pass this problem?

You'll have to supply us with a minimal version of the script and the 
complete error message.


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