[Bioperl-l] alignment by TCoffee as a subroutine

sergei ryazansky dr.hogart at gmail.com
Wed Apr 30 11:14:09 EDT 2008


No, I didn tried.
To tell the truth the problem like this I have obtatin earlier. I simply  
wanted to aling the several set of sequences by TCoffee Bioperl package.  
The script should have been consequently add the set one after another to  
TCoffee wrapper. But after the alignment of the first set of sequences the  
alignment of the rest sets was terminated. So it was neccessary to use  
another "super_script" that called first script with different arguments  
linked to the corresponding set.


> Do you have tried to use the tcoffee command, called via bioperl, as a  
> command line ?


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