[Bioperl-l] Fwd: Re: alignment by TCoffee as a subroutine
cjfields at uiuc.edu
Wed Apr 30 13:02:19 EDT 2008
Hmm, maybe you were confused? From my last email:
"The best way to handle this is to file a bug report, attaching
relevant data using the 'Create a new attachment' link (including
either the full script or a shortened one which demonstrates the bug).
Otherwise we're just shooting in the dark trying to diagnose the
Anyone can work on fixing the issue there (so it'll probably get fixed
faster). The devs can also track progress on the problem via the dev
mail list (bioperl-guts). Diagnosing the bug may also reveal issues
not just with Bio::Tools::Run::Alignment::TCoffee but also with other
If needed I can post it to bugzilla, but it helps to submit the bug
yourself (so you can receive posts on it's progress).
On Apr 30, 2008, at 11:40 AM, Sergei Ryazansky wrote:
> On Wed, 30 Apr 2008 20:25:06 +0400, Chris Fields <cjfields at uiuc.edu>
> Chris, I have already sent file to Sendu and also I am attaching it
> here. I have removed from it really unnecessary parts.
>> I agree with Sendu; we can't diagnose this unless we either have
>> the entire script of a minimal version of it demonstrating the bug.
>> The best way to handle this is to file a bug report, attaching
>> relevant data using the 'Create a new attachment' link (including
>> either the full script or a shortened one which demonstrates the
>> bug). Otherwise we're just shooting in the dark trying to diagnose
>> the problem.
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