[Bioperl-l] Fwd: Re: alignment by TCoffee as a subroutine
dr.hogart at gmail.com
Wed Apr 30 13:39:35 EDT 2008
On Wed, 30 Apr 2008 21:11:56 +0400, Sergei Ryazansky <dr.hogart at gmail.com>
> Oh, sorry, you right - I too fast read you message. I do it slight later.
>> Hmm, maybe you were confused? From my last email:
>> "The best way to handle this is to file a bug report, attaching
>> relevant data using the 'Create a new attachment' link (including
>> either the full script or a shortened one which demonstrates the bug).
>> Otherwise we're just shooting in the dark trying to diagnose the
>> Anyone can work on fixing the issue there (so it'll probably get fixed
>> faster). The devs can also track progress on the problem via the dev
>> mail list (bioperl-guts). Diagnosing the bug may also reveal issues
>> not just with Bio::Tools::Run::Alignment::TCoffee but also with other
>> related modules.
>> If needed I can post it to bugzilla, but it helps to submit the bug
>> yourself (so you can receive posts on it's progress).
>> On Apr 30, 2008, at 11:40 AM, Sergei Ryazansky wrote:
>>> On Wed, 30 Apr 2008 20:25:06 +0400, Chris Fields <cjfields at uiuc.edu>
>>> Chris, I have already sent file to Sendu and also I am attaching it
>>> here. I have removed from it really unnecessary parts.
>>>> I agree with Sendu; we can't diagnose this unless we either have the
>>>> entire script of a minimal version of it demonstrating the bug.
>>>> The best way to handle this is to file a bug report, attaching
>>>> relevant data using the 'Create a new attachment' link (including
>>>> either the full script or a shortened one which demonstrates the
>>>> bug). Otherwise we're just shooting in the dark trying to diagnose
>>>> the problem.
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