[Bioperl-l] malloc errors while using Bio::SeqIO?
hlapp at gmx.net
Sat Aug 9 12:00:46 EDT 2008
This smells of circular references somewhere. I think the first point
I would go looking is the species storing - does the problem go away
if you turn that off? Maybe the version of weaken() is at play here?
On Aug 9, 2008, at 10:15 AM, Chris Fields wrote:
> Forgot to mention, maybe we can file this as a bug? It's a pretty
> serious one but it should be easy to narrow down; the change had to
> be introduced fairly recently.
> On Aug 9, 2008, at 7:58 AM, Dave Messina wrote:
>>> I seem to vaguely recall that even if perl free()'s memory that
>>> necessarily mean that the memory is returned to the OS for the
>>> runtime of
>>> the program
>> I believe that's correct.
>>> What OS are you on? I'm running perl 5.8.6 on OS X 10.4.11 intel.
>> perl 5.10 or 5.8.8 on OS X 10.5.4 Intel.
>> Bioperl-l mailing list
>> Bioperl-l at lists.open-bio.org
> Christopher Fields
> Postdoctoral Researcher
> Lab of Dr. Marie-Claude Hofmann
> College of Veterinary Medicine
> University of Illinois Urbana-Champaign
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
: Hilmar Lapp -:- Durham, NC -:- hlapp at gmx dot net :
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