[Bioperl-l] Fwd: lazy symbol binding

Rutger Vos rvos at interchange.ubc.ca
Fri Aug 15 20:11:48 EDT 2008


---------- Forwarded message ----------
From: Rutger Vos <rutgeraldo at gmail.com>
Date: Fri, Aug 15, 2008 at 5:11 PM
Subject: Re: [Bioperl-l] lazy symbol binding
To: Carl Schmidt <schmidtc at udel.edu>


This looks like a faulty install of the combo of DBI/DBD::mysql

Specifically, the perl driver (DBD::mysql) for the mysql database
builds a dynamic library on installation, which the DBI interface
tries to load dynamically, but fails.

Unfortunately, this is by no means bioperl related. Try a reinstall as
per the instructions at:

http://search.cpan.org/~capttofu/DBD-mysql-4.008/lib/DBD/mysql/INSTALL.pod

On Fri, Aug 15, 2008 at 4:42 PM, Carl Schmidt <schmidtc at udel.edu> wrote:
> When I attempt  bp_load_gff.pl
> I get the following error:
>
> dyld: lazy symbol binding failed: Symbol not found: _mysql_init
>  Referenced from:
> /Library/Perl/5.8.8/darwin-thread-multi-2level/auto/DBD/mysql/mysql.bundle
>  Expected in: dynamic lookup
>
> dyld: Symbol not found: _mysql_init
>  Referenced from:
> /Library/Perl/5.8.8/darwin-thread-multi-2level/auto/DBD/mysql/mysql.bundle
>  Expected in: dynamic lookup
>
> Trace/BPT trap
>
> Any suggestions?  I apologize if this is the wrong place for posting such a
> question.
>
> Thanks
> Carl
>
> Carl J. Schmidt
> Department of Animal & Food Sciences
> University of Delaware
> Newark, DE 19716
> schmidtc at udel.edu
> http://copland.udel.edu/~schmidtc
>
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>



--
Dr. Rutger A. Vos
Department of zoology
University of British Columbia
http://www.nexml.org
http://rutgervos.blogspot.com



-- 
Dr. Rutger A. Vos
Department of zoology
University of British Columbia
http://www.nexml.org
http://rutgervos.blogspot.com


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