[Bioperl-l] [BioSQL-l] Bio::Annotation issues with BioSQL

Chris Fields cjfields at illinois.edu
Wed Aug 20 16:25:55 EDT 2008


On Aug 20, 2008, at 1:43 PM, Mark Johnson wrote:

> ...
>
>> I could make B::A::StructuredValue work the same way, but I'm not  
>> sure what
>> it provides that B::A::Tagtree doesn't. The latter uses Data::Stag  
>> under the
>> hood, which is much cleaner, and more extensible in the future.
>
> Perhaps B::A::StructuredValue should be deprecated?

Probably.  The only place it was used in core was SeqIO::swiss (and  
now that uses Tagtree in bioperl-live).

Let me know if you have any problems with Bio::Annotation::Tagtree.  I  
am planning on doing some more work with it soon.

chris




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