[Bioperl-l] bioperl-network test error

Brian Osborne bosborne11 at verizon.net
Thu Aug 21 16:43:35 EDT 2008


Mohammed,

Try replacing the ModuleBuildBioperl.pm file that you have with the  
one that's attached. Then do this inside the bioperl-network-1.5.2_100  
directory:

./Build clean
perl Build.PL
./Build test

What do you see? Also, what's your version of Perl?


Brian O.




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On Aug 21, 2008, at 3:35 PM, Mohammad Shafiullah wrote:

> To whom it may concern:
>
> Encountered the following error while running ./Build test on
> bioperl-network-1.5.2_100
>
> Can't stat scripts: No such file or directory
> at /usr/share/perl5/Module/Build/Base.pm line 3836
> t/Edge...........ok
> t/Graph-MD5......1/19 Not an ARRAY reference at
> /usr/share/perl5/Heap/Elem.pm line 31.
> t/Graph-MD5...... Dubious, test returned 9 (wstat 2304, 0x900)
> All 19 subtests passed
> t/Graph-Seq......1/16 Not an ARRAY reference at
> /usr/share/perl5/Heap/Elem.pm line 31.
> t/Graph-Seq...... Dubious, test returned 255 (wstat 65280, 0xff00)
> All 16 subtests passed
> t/IO_dip_tab.....ok
> t/IO_psi.........ok
> t/Interaction....ok
> t/Node...........ok
> t/ProteinNet.....ok
>
> Test Summary Report
> -------------------
> t/Graph-MD5  (Wstat: 2304 Tests: 19 Failed: 0)
>  Non-zero exit status: 9
> t/Graph-Seq  (Wstat: 65280 Tests: 16 Failed: 0)
>  Non-zero exit status: 255
> Files=8, Tests=292,  2 wallclock secs ( 0.00 usr  0.02 sys +  1.33  
> cusr
> 0.37 csys =  1.72 CPU)
> Result: FAIL
> Failed 2/8 test programs. 0/292 subtests failed.
>
> Please advise on the issue.
>
> Sincerely,
>
> - Mohammad
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> Bioperl-l at lists.open-bio.org
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