[Bioperl-l] phylip: dnadist x protdist

Chris Fields cjfields at illinois.edu
Sun Dec 14 15:42:10 EST 2008

PiseApplication::dnadist is part of the Pise application suite.  As  
you surmised, Bio::Tools::Run::Phylo::Phylip::DNADist hasn't been  
implemented.  You are more than welcome to work on adding that in,  
though it probably won't be for bioperl-run 1.6 unless it comes out  
fairly soon (within the next month).  I'm planning on branching core  
1.6 sometime later this week with an RC very soon after.


On Dec 14, 2008, at 1:45 PM, Felipe Figueiredo wrote:

> Hello,
> Maybe I'm missing something, but if I'm not, now (pre 1.6) would be a
> good time to move dnadist into the Phylip namespace, where it should  
> (?)
> be.
> Bio::Tools::Run::PiseApplication::dnadist
> Bio::Tools::Run::Phylo::Phylip::ProtDist
> On a second thought, maybe the proper dnadist module (equivalent to  
> the
> ProtDist) is actually missing. Is this the case?
> regards
> FF
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