[Bioperl-l] GenBank ASN.1 SeqIO parser

Chris Fields cjfields at uiuc.edu
Thu Feb 7 16:48:25 EST 2008


No.  The only ASN.1 parser is entrezgene.  You could probably try  
building one using the same ASN.1 parser that SeqIO::entrezgene uses  
(Bio::ASN1::EntrezGene); it includes a parser for sequences:

http://search.cpan.org/~mingyiliu/Bio-ASN1-EntrezGene-1.091/lib/Bio/ASN1/Sequence.pm

chris

On Feb 7, 2008, at 3:24 PM, Ryan Golhar wrote:

> Is there a SeqIO parser module for GenBank ASN.1 format?  I thought  
> it would have been genbank or entrezgene, but neither of them work.
>
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Christopher Fields
Postdoctoral Researcher
Lab of Dr. Robert Switzer
Dept of Biochemistry
University of Illinois Urbana-Champaign





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