[Bioperl-l] Clustering of Gene Ontology Terms

K. Shameer shameer at ncbs.res.in
Thu Feb 21 14:12:16 EST 2008


>> I am not sure if this is a part of Bioperl :). I have tried with few
>> examples it is working fine but I got few wrong results. If this is
>> not part of Bioperl project, I may need to write to the authors.
>
> It's not part of BioPerl, so you should contact the author.

Thanks Chris, Is there any specific way to check installed bioperl modules ?

>
> BioPerl's ontology classes are all in Bio::Ontology and
> Bio::OntologyIO.  I would also recommend looking at Chris Mungall's go-
> perl:
>
> http://search.cpan.org/~cmungall/go-perl-0.08/go-perl.pod

Thanks for the information.


> It's always faster to do it locally, I agree, as long as the tools are
> available to do so.

:)

K. Shameer
NCBS - TIFR



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