[Bioperl-l] Bio::Graphics and perl 5.10
cjfields at uiuc.edu
Fri Feb 22 11:28:01 EST 2008
(cc'ing to gbrowse list as this pertains somewhat...)
Just added a bioperl bug report for this along with the png file
output from perl 5.8 and perl 5.10:
Lincoln's recent commits to Bio::Graphics::FeatureFile didn't fix the
issue. However, it is now pinpointing the problem for both perl 5.8
and perl 5.10 (same warning for both, with only perl 5.10 failing):
ok 1 - use Bio::Graphics::FeatureFile;
ok 2 - use Bio::Graphics::Panel;
Cosmid EST FGENESH SwissProt P-element / yk53c10.3 yk53c10.5 at Bio/
Graphics/FeatureFile.pm line 285.
not ok 4
# Failed test at t/BioGraphics.t line 49.
# got: '7'
# expected: '5'
On Feb 21, 2008, at 10:37 PM, Chris Fields wrote:
> I'm getting a single failed test for Bio::Graphics in bioperl-live
> which appears to be perl 5.10-specific and is related to
> ok 1 - use Bio::Graphics::FeatureFile;
> ok 2 - use Bio::Graphics::Panel;
> ok 3
> not ok 4
> # Failed test at t/BioGraphics.t line 49.
> # got: '7'
> # expected: '5'
> ok 5
> ok 6
> ok 7
> ok 8
> It appears to be coming from render() passing two extra tracks under
> perl 5.10 over what is passed in perl 5.8. If anyone is running
> perl 5.10, can they test this out?
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> Bioperl-l at lists.open-bio.org
Lab of Dr. Robert Switzer
Dept of Biochemistry
University of Illinois Urbana-Champaign
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