bix at sendu.me.uk
Tue Feb 26 05:34:04 EST 2008
Sean Davis wrote:
> On Mon, Feb 25, 2008 at 8:04 PM, Lana Schaffer <schaffer at scripps.edu> wrote:
>> I want to know if Bioperl does t-tests and how to do it?
>> Also, I need to get a chi-squared statistic.
> Hi, Lana. I don't think bioperl offers this functionality. However,
> a quick search of cpan (http://search.cpan.org) turns up:
> That said, I know you are an R user. I generally stick to R for any
> numerics. If you need both a parsing/data munging language and
> statistics, consider python, where the rpy package allows you access R
> from python and even does data conversion, etc.
There's also an R interface for perl:
More information about the Bioperl-l