[Bioperl-l] Parsing SwissProt annotation in comment
Samuel GRANJEAUD - IR/IFR137
granjeau at tagc.univ-mrs.fr
Wed Jan 9 03:30:17 EST 2008
I would like to retrieve the human reviewed annotation of SwissProt
entries; these information are in the comment section of the sequence
file. Here is an example:
CC -!- FUNCTION: Actins are highly conserved proteins that are involved
CC in various types of cell motility and are ubiquitously expressed
CC in all eukaryotic cells.
CC -!- SUBUNIT: Polymerization of globular actin (G-actin) leads to a
CC structural filament (F-actin) in the form of a two-stranded helix.
CC Each actin can bind to 4 others. Found in a complex with XPO6,
CC Ran, ACTB and PFN1. Component of a complex composed at least of
CC ACTB, AP2M1, AP2A1, AP2A2, MEGF10 and VIM. Interacts with XPO6.
CC -!- INTERACTION:
CC Q00987:MDM2; NbExp=1; IntAct=EBI-353944, EBI-389668;
CC P84022:SMAD3; NbExp=1; IntAct=EBI-353944, EBI-347161;
CC -!- SUBCELLULAR LOCATION: Cytoplasm, cytoskeleton.
Is there a specific method to do such a job?
Samuel GRANJEAUD granjeau at tagc.univ-mrs.fr
INSERM - ICIM - TAGC Tel: +33 (0)491 82 87 24
http://tagc.univ-mrs.fr Fax: +33 (0)491 82 87 01
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