[Bioperl-l] Parsing SwissProt annotation in comment

Samuel GRANJEAUD - IR/IFR137 granjeau at tagc.univ-mrs.fr
Wed Jan 9 03:30:17 EST 2008


Hello,

I would like to retrieve the human reviewed annotation of SwissProt 
entries; these information are in the comment section of the sequence 
file. Here is an example:

CC   -!- FUNCTION: Actins are highly conserved proteins that are involved
CC       in various types of cell motility and are ubiquitously expressed
CC       in all eukaryotic cells.
CC   -!- SUBUNIT: Polymerization of globular actin (G-actin) leads to a
CC       structural filament (F-actin) in the form of a two-stranded helix.
CC       Each actin can bind to 4 others. Found in a complex with XPO6,
CC       Ran, ACTB and PFN1. Component of a complex composed at least of
CC       ACTB, AP2M1, AP2A1, AP2A2, MEGF10 and VIM. Interacts with XPO6.
CC   -!- INTERACTION:
CC       Q00987:MDM2; NbExp=1; IntAct=EBI-353944, EBI-389668;
CC       P84022:SMAD3; NbExp=1; IntAct=EBI-353944, EBI-347161;
CC   -!- SUBCELLULAR LOCATION: Cytoplasm, cytoskeleton.

Is there a specific method to do such a job?

Thanks much,
Samuel

-- 

Samuel GRANJEAUD                   granjeau at tagc.univ-mrs.fr
INSERM - ICIM - TAGC               Tel: +33  (0)491 82 87 24
http://tagc.univ-mrs.fr            Fax: +33  (0)491 82 87 01
http://icim.marseille.inserm.fr/proteomique



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