[Bioperl-l] redundant sequences

Cook, Malcolm MEC at stowers-institute.org
Tue Jan 15 18:21:00 EST 2008


Cd-hit: http://bioinformatics.burnham.org/cd-hi/

Malcolm Cook
Database Applications Manager - Bioinformatics
Stowers Institute for Medical Research - Kansas City, Missouri
  

> -----Original Message-----
> From: bioperl-l-bounces at lists.open-bio.org 
> [mailto:bioperl-l-bounces at lists.open-bio.org] On Behalf Of 
> Sonal Singhal
> Sent: Tuesday, January 15, 2008 4:50 PM
> To: bioperl-l at lists.open-bio.org
> Subject: [Bioperl-l] redundant sequences
> 
> Hi all,
> 
> I am mining a few genomes to find all the genes in a gene 
> family, and of course multiple BLAST searches of different 
> paralogs are returning
> a lot of redundant hits.   I have searched the BioPerl documentation,
> and I cannot find an easy way to cluster and then purge 
> redundant sequences.  Any ideas?
> 
> Cheers,
> sonal
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