[Bioperl-l] Question from a bioperl newbie

Brian Osborne bosborne11 at verizon.net
Thu Jan 24 23:04:50 EST 2008


Anjan,

use lib "/Users/anjan/Desktop/bioperl-1.5.2_102/";

Brian O.


On Jan 24, 2008, at 6:32 PM, ANJAN PURKAYASTHA wrote:

> hi,
> i recently installed bioperl on my mac-machine.
> tried to use it in a simple script with a "use Bio::Perl" command.  
> however,
> i get an error message "Can't locate Bio/Perl.pm in @INC".
> the BioPerl folder is in my desktop. so i tried use: use lib
> "/Users/anjan/Desktop/bioperl-1.5.2_102/Bio";
> This time it returned me another error: Undefined subroutine
> &main::get_sequence.
>
> so, when BioPerl is installed, which directory does it reside in. 
> ( it's not
> present in the .cpan/build directory.)
>
> appreciate your prompt reply.
>
> anjan
>
> -- 
> ANJAN PURKAYASTHA, PhD.
> Senior Computational Biologist
> ==========================
>
> 1101 King Street, Suite 310,
> Alexandria, VA 22314.
> 703.518.8040 (office)
> 703.740.6939 (mobile)
>
> email:
> anjan at vbi.vt.edu;
> anjan.purkayastha at gmail.com
>
> http://www.vbi.vt.edu
>
> ==========================
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