[Bioperl-l] BioPerl module to extract sequence from gene names

Edward Wijaya ewijaya at gmail.com
Fri Jan 25 04:26:05 EST 2008


Dear Experts,

Suppose I have the following list of gene names and Ensemble Ids.

RBL1	ENSG00000080839
RB1	ENSG00000139687
CDC2	ENSG00000170312
CDC25A	ENSG00000164045
CCNA2	ENSG00000145386
E2F3	ENSG00000112242
E2F2	ENSG00000007968
CDK2	ENSG00000123374
...etc...

Is there a way to extract the gene sequence from those list?
And then output them in FASTA format.

- Edward


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