[Bioperl-l] BioPerl module to extract sequence from gene names
bosborne11 at verizon.net
Fri Jan 25 08:53:36 EST 2008
Various approaches are discussed here:
Since you have ENSEMBL ids I'd think that would be the way to go.
On Jan 25, 2008, at 4:26 AM, Edward Wijaya wrote:
> Dear Experts,
> Suppose I have the following list of gene names and Ensemble Ids.
> RBL1 ENSG00000080839
> RB1 ENSG00000139687
> CDC2 ENSG00000170312
> CDC25A ENSG00000164045
> CCNA2 ENSG00000145386
> E2F3 ENSG00000112242
> E2F2 ENSG00000007968
> CDK2 ENSG00000123374
> Is there a way to extract the gene sequence from those list?
> And then output them in FASTA format.
> - Edward
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