[Bioperl-l] bioseqDB error

snoze pa snoze.pa at gmail.com
Mon Jan 28 16:07:37 EST 2008


Still I am getting the same error message..

My question is:

Do i need to install bioperl-DB for biosql?

When I am using biosql and trying to load NCBI taxonomy then it is working
fine. but when I am trying to install bioperl-DB then it is giving me
following error message when loading NCBI taxonomy.

Any help?



Loading NCBI taxon database in taxdata:
        ... retrieving all taxon nodes in the database
        ... reading in taxon nodes from nodes.dmp
        ... insert / update / delete taxon nodes
failed to insert node (10090;10090;10088;species;1;2): Duplicate entry
'10090' for key 2 at load_ncbi_taxonomy.pl line 568


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